In a statement, Gov. Mike Pence says the Indiana Department of Homeland Security will appeal the agency's decision.
Congress is expected to vote on the deal later this week.
The five biggest donors to the Indiana Economic Development Foundation are utility companies, contributing more than $100,000 each this year alone.
Pence ordered an investigation of Planned Parenthood two weeks ago after videos allegedly showed officials discussing the sale of aborted fetal tissue.
The governor on Wednesday announced Democrat Jim Schellinger will head the state’s economic development agency.
Marion County Superior Court judge and former Marion County Deputy Prosecutor Robert Altice was chosen from three nominees to fill the seat.
Animosity over the Religious Freedom Restoration Act and the Pence administration’s support for the measure has split the state.
The proposed regulations would call for a 20 percent reduction from Indiana’s 2005 carbon emission levels by 2030.
The casino bills aim to help the state's gaming industry compete against casinos in neighboring states.
That executive order provides resources to handle the outbreak, which the Centers for Disease Control and Prevention says has reached epidemic proportions.